Visualisation

Re-occurs among biii.info tags (visualisation, rendering, viewer, classification, ...)

Synonyms
Plotting
Description

When opening the Pannoramic Viewer you see all of your virtual slides in thumbnail view. Selecting one (or up to 10 at a time) the slide gets under the virtual objective of the virtual microscope. Here you can move and change the magnification of the slide quickly and easily using the mouse. Emphasizing 'quickly' is important considering the fact that the size of an average virtual slide can easily be more than 1 GB.

 

Main characteristics:

  • Seamless zooming and moving of the virtual slide
  • Bookmarking (annotating) on the spot, i.e. defining the specific part of the sample by drawing; finding and reading of previously made bookmarks
  • Easy and precise measurements
  • Real-time changing of brightness, contrast and color bias
  • Fluorescent slide handling, separate channel view & pseudo-colorization
  • Slide uploading and downloading for teleconsultation
  • Synchronized viewing (moving and zooming) of multiple slides for comparison purposes
  • Publication quality image capture of displayed areas (.JPG, .BMP, .TIFF)
  • TIFF, MIRAX slide and Meta-XML export for Carl Zeiss AxioVision™ compatibility
  • Scanmap export for rescanning existing digital slides
  • Easily expandable functionality via the software modules
Description

The 3D Rotation plug-in allows you to record a 360 degree rotation of the current focused 3D VTK viewer about the vertical screen axis.

The 'angle step' parameter indicates the deviation in degrees between two consecutive snapshots. Increasing the angle will increase rotation speed (up to a point where it might look like jumping more than rotating) and reduce the final movie length.

need a thumbnail
Description

3D viewer provides hardware-accelerated 3D visualization of image stacks as volumes, surfaces and orthoslices.

has function
Description

This plugin allows the creation of custom animations for 3D viewing. It will generate a new sequence that can be edited in Icy, and saved.

The animation is based on key framing, as in most of 3D rendering software projects.

has topic
has function