Visualisation

Plugin designed to allow easy semi-automatic tracing of neurons or other filament-like structures (e.g., microtubules, blood vessels) through either 2D images or 3D image stacks. Data can be imported and exported in SWC files for interaction with other software, or details of the traces can be exported as CSV files for analysis in spreadsheets or statistical software.

This plugin is included in Fiji by default.

Displays a live tool tip on the current focused ROI in an image.

The tooltip displays the following informations about the ROI:
– position and size.
– number of interior points and contour points.
– perimeter, area, surface area, volume.
– min, max, mean intensity.

This plugin is a daemon plugin, that means plugin is automatically loaded when Icy starts.

The aim of this plugin is to characterise the orientation and isotropy properties of a region of interest (ROI) in an image, based on the evaluation of the gradient structure tensor in a local neighborhood. 

This plugin simulates color blindness. 
It is based on http://quarkphysics.ca/phys1/light/u-light.htm