Bioimage informatics

Enables Python scripts that are run inside Icy to communicate with other Python instances outside Icy. This allows the access to CPython-only libraries such as Numpy.

Resources requiring this include: CalloseCounter, BioFlow, EvaFE In Python

MonogenicJ performs multiresolution monogenic analyses of 2D images. It extracts wavelet-domain features that characterize the local orientation, the phase and the dominant frequency of an image patch at various levels of resolution.

This plugin has two components:

• Elastic Montage
  • montaging mosaics from overlapping tiles where the tiles have non-linear relative deformation
• Elastic Stack Alignment
  • alignment of deformed section series from serially sectioned volumes