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Name Category Image requires Type interaction level License/Openness has function has topic
QuantCenter Software QuantCenter logo Collection Automated, Manual, Semi-automated Commercial Analysis, Image classification, Cell segmentation, Object classification, Object detection, Pattern recognition, Visualisation Bioimage informatics, Digital histology, Fixed sample imaging
Quantification of outer ring diameters of centriole or PCM proteins of cycling HeLa cells in interphase Software Combined view from Figure 1 Lawo et al. ImageJ, R Project for Statistical Computing, Maximum Entropy Threshold (ImageJ), Analyze Particles, OMERO.insight-ij client Workflow Free and open source Object detection, Object feature extraction, Analysis High content screening, Fluorescence microscopy, Structured illumination microscopy
QuantiFish Software QuantiFish User Interface Workflow Automated Free and open source Image registration, Image thresholding, Object counting, Object detection Imaging, In-vivo imaging, Light microscopy, Fluorescence microscopy
Quantifying staining in tissue sections Software ImageJ, Colour Deconvolution Component Manual Free and open source Spectral unmixing Digital histology
Quantile Filter (KNIME) Software need a thumbnail KNIME Component Automated Free and open source Image feature detection Bioimage informatics
Quantitative analysis of focal adhesion dynamics Software MATLAB Workflow Semi-automated Free and open source Particle tracking
Quantitative analysis of focal adhesions Software ImageJ, Log3D, CLAHE Workflow Manual Free and open source Image segmentation, Image thresholding Fluorescence microscopy
Quantitative Evaluation of Multicellular Movements in Drosophila Embryo Training Material
QuickFit 3 Software Collection, Component Automated, Semi-automated Free and open source Image analysis, Plotting Fluorescence correlative spectroscopy, Image correlation spectroscopy
quickPALM Software need a thumbnail ImageJ, Micro-Manager Workflow Automated I do not know
QuimP Software Screenshot Collection Automated, Manual, Semi-automated Free and open source Cell segmentation, Interactive segmentation, Shape features, Object tracking, Cell tracking Fluorescence microscopy
QuPath Software QuPath Collection Automated, Manual, Semi-automated Free and open source Cell segmentation, Interactive segmentation, Pixel classification, Annotation, Image annotation Digital histology, Machine learning, Supervised learning
Qupath Multiplex Analysis Software cells positive for different markers in different channels Workflow Free and open source
R Software need a thumbnail
R Project for Statistical Computing Software need a thumbnail
radial reslice Software need a thumbnail
Rafael C. Gonzalez, Richard E. Woods."Digital Image Processing", Pearson, 2008 Training Material
RapidSTORM Software Collection Automated Free and open source Image processing Super-resolution microscopy, Single molecule localization microscopy
RapidSTORM usage tutorial Software RapidSTORM Workflow Semi-automated Free and open source Single molecule localisation Single molecule localization microscopy
RATS: Robust Automatic Threshold Selection Software need a thumbnail ImageJ Component Semi-automated Free and open source Image thresholding Bioimage informatics