filament

Neuron Tracing Vaa3D (MST)

Workflow
Description

3D Neuron Tracing using Dockerized version of Vaa3D Minimum Spanning Tree (MST).

has topic
Bioimage informatics
has function
Filament tracing
Neuron image analysis
need a thumbnail

Neuron Tracing 3D (Rivuletpy)

Workflow
Description

Rivuletpy dockerised workflow for BIAFLOWS.

has topic
Machine learning
has function
Filament tracing
Neuron image analysis
need a thumbnail

Filament Tracing (ImageJ)

Workflow
has function
Filament tracing
Smoothing
Skeletonisation
need a thumbnail

NanoJ

Collection
Description

Set of Tools for super resolution microscopy

has topic
Live sample imaging
Fluorescence microscopy
Super-resolution microscopy
has function
Image registration
Image analysis
Image processing
Image correction

MiToBo

Collection
Description

"The Microscope Image Analysis Toolbox MiToBo is an extension for the widely used image processing application ImageJ and its new release ImageJ 2.0.
MiToBo ships with a set of operators ready to be used as plugins in ImageJ. They focus on the analysis of biomedical images acquired by various types of microscopes."

has topic
Bioimage informatics
Statistics
has function
Analysis
Image feature detection
Cell segmentation
Object detection
Object feature extraction
Visualisation
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