NucleusJ

Type
Collection
Author
Poulet, Alex
Requires
Fiji
MorphoLibJ
Execution Platform
Linux
Mac
Windows
Implementation Type
plugin
Programming Language
Java
Supported image dimension
2D
3D
Interaction Level
Semi-automated
License/Openness
Free and open source
License
GPLv3
Description

Starting from image stacks, the nuclear boundary as well as nuclear bodies are segmented. As output, NucleusJ automatically measures 15 parameters quantifying shape and size of nuclei as well as intra-nuclear objects and the positioning of the objects within the nuclear volume.

has function
Image segmentation
has topic
Bioimage informatics
has biological terms
nucleus
Entry Curator
kota
Post date
12/13/2019 - 00:40
Last modified
04/29/2023 - 11:41
Download Page
Github Releases
Reference Publication Link
Poulet, Axel, Ignacio Arganda-Carreras, David Legland, Aline V. Probst, Philipp…
Usage Example Link
Desset et al. “Quantitative 3D Analysis of Nuclear Morphology and Heterochromat…
Backlinks